Perhentian Islands Itinerary: 3 Days in Paradise

Stepping off the speedboat into the warm, turquoise sea was the moment we knew our 3 days itinerary on the Perhentian Islands in Malaysia was going to be unforgettable. These islands on the east coast of Malaysia are famous for their crystal clear water, coral reefs, and relaxed atmosphere, and spending 3 days here gave us the perfect mix of snorkelling, beach time and island adventure.

We booked a Perhentian Islands full board package that included transfers from Kuala Besut jetty, meals and basic accommodation, which made planning easy and stress free. Over the course of three days we snorkelled with turtles, explored coral gardens, swam in water warmer than a bath and still had time to relax on soft white sand. If you are looking for the best way to spend 3 days on the Perhentian Islands, this guide covers everything from how to get there and what to expect from the resorts to the highlights you should not miss.

Getting to the Perhentian Islands

Reaching the Perhentian Islands takes a little effort, but the journey is part of the adventure. We started with a domestic flight from Kuala Lumpur to Kota Bharu airport, which is the closest airport to the islands. From there we took a Grab car to Kuala Besut jetty, a journey of just under an hour that cost around $15.

The final leg was by speedboat, the only way to reach the islands. Boat transfers run at set times each day, usually around 8am, 12pm and 4pm, although the exact schedule depends on your resort. This part is crucial for planning because flights that don’t align with boat times can leave you waiting for hours at the airport or jetty. We learned this the hard way after booking a flight too close to the evening transfer and having to both leave earlier than we would like and sit in the airport for what felt like an eternity. 

Once on board, the ride itself was a thrill. We bounced across the waves for about 40 minutes before the water turned from deep blue to bright turquoise. The moment we saw the outlines of the Perhentian Islands ahead, we knew the journey had been worth it.

Where to Stay on the Perhentian Islands – Resorts and Accommodation Guide

We bought a full board package like this on Viator - I can’t find the exact version now but this is very similar. All meals and boat transfers being included made everything straightforward. If you’re planning 3 days on the Perhentian Islands and want a stress free experience where all the basics are taken care of, this is a great option.

Accommodation on the Perhentian Islands is simple compared to other Malaysian beach destinations, but that’s part of the charm. Resorts here rely on limited island resources, so even the most comfortable stays are fairly low key. Our room was basic but had everything we needed — a clean bed, private bathroom and air conditioning to keep things cool. Wi-Fi was only available in the lobby, but honestly we spent so much time in the water that it didn’t really matter.

If you’re looking for five star luxury you might not find it here, but what you do get is the sound of waves at night, hammocks strung between palm trees and the beach right on your doorstep. For us it was exactly what we wanted, comfortable and relaxed, with the focus firmly on the sea rather than the room.

Day 1 – Arrival, Lunch and Late Afternoon Snorkelling on the Perhentian Islands

We arrived on the island just in time for lunch, which was included with our stay. Meals on the Perhentian Islands are simple but filling, usually rice, noodles or seafood dishes that gave us plenty of energy for the afternoon. After eating we took a short rest, soaking in the views from the beach and shaking off the journey, before doing what we really came for: getting into the water.

By late afternoon we had our snorkel gear on and slipped into water so clear it looked like glass. We had chosen that time to dodge the extreme UV, which regularly reaches 11+ on the islands, but even then the sun still packed a punch. Over the next ninety minutes we swam among schools of fish and were lucky enough to see a turtle as well as several reef sharks and sting rays. Each encounter felt special in its own right, and together they turned our first swim into a highlight of the entire trip

We left the water, took a shower in our room and headed to dinner on a high.

Day 2 – Snorkelling Trip, Marine Life and Beach Time on the Perhentian Islands

Our second day was all about the sea. After breakfast we joined a snorkelling trip arranged by the resort, which took us out to several different sites around the Perhentian Islands. Each stop offered something different. At one we spotted turtles surfacing for air before drifting back below. At another, several reef sharks cruised just beneath us, moving with calm precision while we floated above. We also came across sting rays half hidden in the sand, only flicking their wings when we got close.

Some of the stops were over coral reefs, where we swam among schools of fish weaving between the formations. The water was as warm as a bath and incredibly clear, so we could spend hours in it without ever feeling cold.

For anyone wanting to mix things up, the islands also offer plenty of other activities. Scuba diving is available for both beginners and experienced divers, and the dive schools here are well known for being welcoming and professional. Kayaks can be rented if you want to paddle between beaches, and there are a host of other water sports on offer if you prefer a faster pace. Additionally, water taxis can be hired for private transfers between the 2 islands, to specific beaches and snorkelling spots. 

By early afternoon we returned to the resort, where the rest of the day was spent the way island time is meant to be enjoyed. We played in the sand, swam just off the beach, and lazed in the shade when the sun got too strong. Meals were included so there was no need to wander far, and by the evening we were happily worn out from hours in the water.

Day 3 – Morning Snorkel, Breakfast and Departure from the Perhentian Islands

On our final morning we squeezed in one last snorkel before breakfast. The water was calm, the light was soft, and it felt like the perfect way to say goodbye to the Perhentian Islands. After a quick swim we ate, packed up our bags and checked out, still reluctant to leave but grateful for every moment we’d had.

The boat transfer back to Kuala Besut was straightforward, and once we reached the jetty we stopped at a small café just nearby for food before heading on to the airport. It was a simple meal but exactly what we needed after an early start and a salty morning in the sea.

Travel days here can feel long, especially if your flight doesn’t line up neatly with the boat schedule, so it’s worth keeping snacks handy or planning a stop like this. For us it was a nice pause before the journey home and a last chance to linger near the water.

Final Thoughts – Is 3 Days Enough on the Perhentian Islands?

The Perhentian Islands might take some effort to reach, but once you are there the reward is clear. Warm turquoise water, incredible marine life and the kind of relaxed atmosphere that makes three days feel like a proper escape. Our 3 days itinerary gave us everything we hoped for: snorkelling with turtles, sharks and sting rays, lazy hours on the beach and plenty of time to just switch off.

Despite the simple accommodation and the slightly tricky logistics, we would go back in a heartbeat. If you are looking for a short island getaway in Malaysia, the Perhentian Islands are absolutely worth the journey.

FAQ: Perhentian Islands Travel Tips, Hotels and Day Trips

How do you get to the Perhentian Islands?

The only way is by speedboat from Kuala Besut jetty. The nearest airport is Kota Bharu (KBR), about an hour’s drive away. We used Grab for around $15. From Kuala Lumpur, daily flights run to Kota Bharu.

What time are the boat transfers?

Most resorts have fixed departure times, usually 8am, 12pm and 4pm, though this can vary. It’s important to line up your flights with these times or you could end up waiting several hours.

What is the UV like on the islands?

The UV index regularly reaches 11+, which is considered extreme. Reef safe sunscreen, rash vests and hats are essential if you plan to spend time outside or in the water.

Is accommodation basic?

Yes. Resorts on the Perhentian Islands are simple due to limited resources. Rooms are clean and comfortable but do not expect luxury. Wi-Fi is often only available in the lobby or common areas. If you are thinking of extending your stay, check out these hotels on the Perhentian Islands for options that suit different budgets.

Should I bring cash?

Definitely. ATMs are unreliable and card payments are not always accepted, especially at smaller cafés and local shops.

What activities are available?

Snorkelling is the main draw, but scuba diving, kayaking and other water sports are available. Many resorts can arrange trips or equipment rentals.

Can you take day trips from Kuala Besut?

Yes. If you are short on time or do not want to stay overnight, some operators run day trips from Kuala Besut to the Perhentian Islands. These usually include return boat transfers and a snorkelling tour, giving you a taste of the islands in just one day.

When is the best time to visit the Perhentian Islands?

The islands are seasonal and most resorts close during the monsoon (November to February). The best time to visit is between March and October when the seas are calm, the skies are clear and boat transfers run regularly.